Mouse Brain MRI Image Classification with Data Parallelism
Mouse Brain MRI scans are used in medical research to understand brain activity as a result of testing a new drug before public release. The brain scans are done after slicing the mouse brain along 3 planes - horizontal, sagittal and coronal. Given a set of mouse brain MRI scans after cut along the 3 planes, we want to identify the class of an MRI scan given an image. This project acquires high resolution (5000x5000) histopathology images chunked into smaller bits across the servers and auto-stitches them to form an image with a specified magnification level. These images are then scaled to 227x227 to be further used for inference using pretrained ResNet-50, Inception-ResNet and ResNext-50 models and the models are trained using transfer learning with IMAGENET weights as initializers.